BIOS Instant Notes in Bioinformatics
eBook - ePub

BIOS Instant Notes in Bioinformatics

  1. 352 pages
  2. English
  3. ePUB (mobile friendly)
  4. Available on iOS & Android
eBook - ePub

BIOS Instant Notes in Bioinformatics

About this book

The second edition of Instant Notes in Bioinformatics introduced the readers to the themes and terminology of bioinformatics. It is divided into three parts: the first being an introduction to bioinformatics in biology; the second covering the physical, mathematical, statistical and computational basis of bioinformatics, using biological examples wherever possible; the third describing applications, giving specific detail and including data standards. The applications covered are sequence analysis and annotation, transcriptomics, proteomics, metabolite study, supramolecular organization, systems biology and the integration of-omic data, physiology, image analysis, and text analysis.

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Yes, you can access BIOS Instant Notes in Bioinformatics by J Howard Parish,Richard M Twyman,Charlie Hodgman,Andrew French,David Westhead in PDF and/or ePUB format, as well as other popular books in Biological Sciences & Biology. We have over one million books available in our catalogue for you to explore.

Information

Publisher
Taylor & Francis
Year
2009
eBook ISBN
9781134158867
Edition
2
Topic
Biological Sciences
Subtopic
Biology
Index
Biological Sciences

INDEX

0-D data 30
1-D data 30
2-D data 31
2D-NMR 31, 270
3D-data 32
454 sequencing 107, 113
80–20 rule 46

abstraction 41, 69, 71
ACeDB 109, 120, 121, 128, 132, 138
adaptive method 87
adjacency list 72, 75
adjacency matrix 74, 75
alpha release 42
analysis of variance (ANOVA) 61, 65
arcs 72
annealing 13, 15–17, 103, 105
annotation 132
arithmetic mean 62, 169
arithmetic logic unit 37–39
ArMeT 270
array 3, 4, 19, 22, 23, 29, 32, 35–40, 50, 67, 73, 75, 94, 103, 114, 181–191, 194–196, 199–201, 205, 279, 299, 302–305, 311
artificial intelligence 89, 90, 168, 253
ASCII 19, 21, 22

bad 327
base calling 113
Bayesian belief network 196
Bayesian inference 57, 91, 92, 197
Bayesian networks 93, 94
Bayesian reasoning 91, 93
Bayesian statistics 57, 91, 93, 194, 196, 204
Bayes’ rule 57–59, 92, 93
Benjamini-Hochberg correction 61, 67
beta release 42
bifurcational analysis 283, 286
binomial distribution 49, 51, 52
biochemical pathway 76, 109, 125, 276, 277
Bioconductor 187–190
biological replicate 200, 201
biological system 4, 5, 10, 13, 14, 69, 79, 262, 275, 289
bipartite graph 77
bit 20–22, 35, 39, 43, 102, 103, 264, 265, 300–302
bit depth 299, 300
Bonferroni correction 67
Boolean network 194, 197
Boundary-element analysis 86
byte 4, 20–23, 31, 32, 40, 41
bytecode 40

C++ 25, 37, 39, 40, 75
Canny operator 315
cellular automata 78
central limit theorem 54, 311
central processing unit 20, 37, 38
chain termination sequencing 111
CheBI 277
ChIP-chip 181, 183
chi-squared 65
cladograms 165
cliques 73, 74, 219, 278
cluster 10, 90, 103, 113, 123, 126, 161, 168–171, 178, 182, 188–190, 194–196, 201, 203–205, 209, 219, 220, 255, 260, 311, 319, 320, 325
clustering 90, 109, 161, 168–171, 178, 188–190, 194–196, 201, 203, 209, 319, 320, 325
color images 301, 302
compiler 40
compression 302, 303
Computable Plant project 293
computing power 45, 273, 291, 296, 297, 327
conditional probability 49...

Table of contents

  1. BIOS INSTANT NOTES
  2. CONTENTS
  3. ABBREVIATIONS
  4. PREFACE
  5. Section A The changing face of research biology
  6. Section B Definitions of bioinformatics
  7. Section C Essentials of physics
  8. Section D Data and databases
  9. Section E Data categories
  10. Section F Computation
  11. Section G Probability and statistics
  12. Section H Modeling and mathematical techniques
  13. Section I Artificial intelligence and machine learning
  14. Section J Genomes and other sequences
  15. Section K Transcriptomics
  16. Section L Proteins and proteomics
  17. Section M Metabolomics
  18. Section N Supramolecular organization
  19. Section O Biochemical dynamics
  20. Section P Physiology
  21. Section Q Image analysis
  22. Section R Textual analysis
  23. FURTHER READING
  24. INDEX