Rabbits have many uses - as well as being cherished pets, they are bred for their meat and fur, and as laboratory animals. Understanding their genetics and genomics is key to their production and, equally, to their care, welfare and health. Beginning with an introduction to the rabbit, including key information on their evolution, domestication and breed types, this book then concentrates on the genetics and genomics of this valuable animal. This book covers: - Cytogenetics, genetic maps and QTL mapping;- Immunogenetics;- Genetics of coat colour, meat, fibre and fur production, reproduction, disease resistance and more.Concluding with practical applications such as creating transgenic and genome edited rabbits, biotechnical applications and the rabbit as a biomedical model, this book brings this important topic fully up-to-date. It provides an indispensable resource for animal and veterinary researchers and students, as well as rabbit breeders and laboratory scientists.
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1 The Evolution, Domestication and World Distribution of the European Rabbit (Oryctolagus cuniculus)
Luca Fontanesi1*, Valerio Joe Utzeri1 and Anisa Ribani1
1Department of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Italy
1.1 The Order Lagomorpha
The European rabbit (Oryctolagus cuniculus, Linnaeus 1758) is a mammal belonging to the order Lagomorpha.
Lagomorphs are such a distinct group of mammalian herbivores that the very word âlagomorphâ is a circular reference meaning âhare-shapedâ (Chapman and Flux, 1990; Fontanesi et al., 2016). A unique anatomical feature that characterizes lagomorphs is the presence of small peg-like teeth immediately behind the upper-front incisors. For this feature, lagomorphs are also known as Duplicidentata. Therefore, instead of four incisor teeth characteristic of rodents (also known as Simplicidentata), lagomorphs have six. The additional pair is reduced in size. Another anatomical characteristic of the animals of this order is the presence of an elongated rostrum of the skull, reinforced by a lattice-work of bone, which is a fenestration to reduce the weight (Chapman and Flux, 1990; Rose, 2006). The herbivorous diet and the terrestrial mode of life are the primitive conditions of this order (LĂłpez-MartĂnez, 1985). All lagomorphs are also characterized by a specific feeding behaviour known as caecotrophy, that is the re-ingestion of soft cecal-derived faeces needed to assure essential vitamin uptake, the digestion of the vegetarian diet and water reintroduction (HĂśrnicke, 1981).
The order Lagomorpha was recognized as a distinct order within the class Mammalia in 1912, separated from the order Rodentia within which lagomorphs were originally placed (Gidely, 1912; Landry, 1999). Lagomorphs are, however, considered to be closely related to the rodents from which they diverged about 62â100 million years ago (Mya), and together they constitute the clade Glires (Chuan-Kuei et al., 1987; Benton and Donoghue, 2007). Lagomorphs, rodents and primates are placed in the major mammalian clade of the Euarchontoglires (OâLeary et al., 2013).
Modern lagomorphs might be evolved from the ancestral lineage from which derived the â Mimotonidae and â Eurymilydae sister taxa, following the Cretaceous-Paleogene (K-Pg) boundary around 65 Mya (Averianov, 1994; Meng et al., 2003; Asher et al., 2005; LĂłpez-MartĂnez, 2008).
The systematics of the order are not completely clear yet and currently under revision by the International Union for Conservation of Nature and Natural Resources (IUCN), Species Survival Commission (SSC), Global Mammal Assessment, and Lagomorph Specialist Group (LSG). The order is divided into two families (Fig. 1.1; Hoffmann and Smith, 2005; Chapman and Flux, 2008; Fontanesi et al., 2016): (i) Ochotonidae (the pikas), with 26 teeth, and (ii) Leporidae (the jackrabbits and hares, and the rabbits), with 28 teeth. According to the most accepted taxonomy, these two families account for a total of 92 living species (Chapman and Flux, 1990; Fontanesi et al., 2016; Melo-Ferreira and Alves, 2018).
Fossil and molecular estimates are not completely in agreement in the identification of the evolutionary split between these two extant families. Fossil data seem consistent in indicating that the divergence period occurred before 42 Mya (Ruedas et al., 2018) even if molecular estimates based on mitochondrial and nuclear genome sequences have placed this family split in a more recent period (about 30 Mya; Matthee et al., 2004). Merging fossil data and molecular estimates, the differentiation time has been placed around 50 Mya (Meredith et al., 2011).
The list of all recognized extant lagomorph species is reported in Table 1.1. The family Ochotonidae comprises 29 species of small (70â300 g) egg-shaped mammals with distinct rounded ears and no visible tail. All species have been assigned to the genus Ochotona. They have hind legs not much longer than the fore legs. Most of these species are vocal. There are two major groups of pikas (Smith, 1988; Smith et al., 1990; Lissovsky, 2014): (i) those that live in rocks or talus have low reproductive rates and are generally long-lived; they are territorial either as individuals or pairs and have extremely low rates of social interaction; and (ii) those that live in meadow or steppe habitat and burrow; they have high reproductive rates and are generally short-lived; these species form extended families and are highly social. These groups have been divided into five subgenera (Alienauroa, Conothoa, Lagotona, Ochotona, and Pika), commonly recognized mainly considering their distribution (Hoffmann and Smith, 2005; Lissovsky, 2014). A recent phylogenomic analysis recognized four subgenera of extant pikas (Alienauroa, Conothoa, Ochotona and Pika), with the mountain group Conothoa being the sister group of all other pikas (Wang et al., 2020).
Table 1.1. List of lagomorph species. (From Chapman and Flux, 1990; Fontanesi et al., 2016; Melo-Ferreira and Alves, 2018)
Family/genus
Species
Common name
Ochotonidae
Ochotona
O. alpina
Alpine Pika
O. argentata
Helan Shan Pika
O. cansus
Gansu Pika
O. collaris
Collared Pika
O. coreana
Korean Pika
O. curzoniae
Plateau Pika
O. dauurica
Daurian Pika
O. erythrotis
Chinese Red Pika
O. forresti
Forrestâs Pika
O. gloveri
Gloverâs Pika
O. hoffmanni
Hoffmannâs Pika
O. hyperborea
Northern Pika
O. iliensis
Ili Pika
O. koslowi
Koslovâs Pika
O. ladacensis
Ladak Pika
O. macrotis
Large-eared Pika
O. matchurica
Mantchurian Pika
O. nubrica
Nubra Pika
O. opaca
Kazakh Pika
O. pallasii
Pallasâs Pika
O. princeps
American Pika
O. pusilla
Steppe Pika
O. roylei
Royleâs Pika
O. rufescens
Afghan Pika
O. rutila
Turkestan Red Pika
O. syrinx
Qinling Pika
O. thibetana
Moupin Pika
O. thomasi
Thomasâs Pika
O. tutuchanensis
Turuchan Pika
Leporidae
(the rabbits)
Brachylagus idahoensis
Pygmy Rabbit
Bunolagus monticularis
Riverine Rabbit
Caprolagus hispidus
Hispid Hare
Nesolagus netscheri
Sumatran Striped Rabbit
Nesolagus timminsi
Annamite Striped Rabbit
Oryctolagus cuniculus
European rabbit
Pentalagus furnessi
Amami Rabbit
Poelagus majorita
Bunyoro Rabbit
Pronolagus crassicaudatus
Natal Red Rock Hare
Pronolagus randensis
Jamesonâs Red Rock Hare
Pronolagus rupestris
Smithâs Red Rock Hare
Pronolagus saundersiae
Hewittâs Red Rock Hare
Romerolagus diazi
Volcano Rabbit
Sylvilagus
S. aquaticus
Swamp Rabbit
S. audubonii
Desert Cottontail
S. bachmani
Brush Rabbit
S. brasiliensis (sensu stricto)
TapetĂ, Andean Cottontail, Rio de Janeiro Dwarf Cottontail