Human Microbial Ecology

Michael J. Hill, Philip D. Marsh

• Éditeur: CRC Press
• Année: 2020
• ISBN:
  9781000141399
• Édition: 1
• Sujet: Biological Sciences
• Sous-sujet: Biology

The aim of this comprehensively written volume is to provide a baseline of information on the normal microflora at various sites in the body. It focuses on the mouth, upper digestive tract, large intestine, skin, and urinogenital tract. Written in an easy-to-read format, this book highlights the level of detail available. For example, it explains that in the mouth and colon the data are extremely detailed and good quantitative information is available on large numbers of bacterial species. This work analyzes the similarities and differences between the microfloras of the various "internal" surfaces, and discusses the clear value of good taxonomy. It focuses on problems and extended research in the progress at other sites. Because this work researches the advances and discoveries made in specific areas of human microbial ecology, it is an ideal source for all who are involved in microbiology, bacteriology, and infectious diseases.

Chapter 1

FACTORS CONTROLLING THE MICROFLORA OF THE HEALTHY MOUTH

Else Theilade

TABLE OF CONTENTS

I. Introduction

II. Oral Habitats

III. The Normal (Resident) Oral Microflora of Man

A. Definition

B. The Resident Oral Microflora

C. Transient Oral Microflora

D. The Oral Microflora in Health and Disease

IV. Methods of Studying the Oral Microflora

A. Sampling

B. Transport and Suspension of Samples

C. Examination By Microscopy

D. Cultural Studies

V. Microorganisms of the Resident Oral Microflora

VI. The Microflora of the Major Oral Habitats

A. Mucosal Surfaces

B. Teeth and Artificial Structures

VII. Adherence and Retention of Microorganisms in the Mouth

VIII. Growth Conditions and Sources of Nutrients

A. Oral pH

B. Anaerobiosis

C. Nutrients

IX. Microbial Interactions among the Oral Microflora

X. Regulation by Host Defense Mechanisms

XI. Acquisition and Development

XII. Effect of Antimicrobial Agents

XIII. Conclusion

References

I. INTRODUCTION

Microorganisms from the mouth were first observed in 1683 by Antonie van Leeuwenhoek using his newly developed microscope. No significance was, however, ascribed to them at that time. When Pasteur had established the foundation of modern microbiology, Miller,¹ in 1890, reported on his pioneer studies and put forward hypotheses which still hold on the role of oral bacteria in the aetiology of dental caries and periodontal diseases.¹ The inspiration of Scherp (1908—1974) in education and research guided us on to fruitful investigations of the ecology of the oral microbiota and the complex host-microbial interactions prevailing in the mouth. The oral microflora is beneficial for the host, mainly by acting as a barrier against exogenous microorganisms. Thus, long-term antibiotic therapy may suppress the normal oral flora and give rise to overgrowth by, for example, enteric bacteria. Another useful function may be the production of vitamins B and K. On the other hand imbalances in the normal oral microflora may lead to oral diseases such as dental caries and periodontal diseases which are very prevalent and costly to treat. Oral microorganisms also cause opportunistic infections of oral soft tissues and bones (“dental abscesses”) and sometimes even spread to remote parts of the body giving rise to infective endocarditis or abscesses of lung, liver, or brain. During the past 30 years, numerous investigators around the world have contributed to an explosive increase in information about the oral ecosystems in health and disease. The oral microflora and its interactions are, however, far more complex than anticipated, and much research remains to be done.

II. ORAL HABITATS

The oral ecosystem consists of the oral microorganisms and the surroundings in which they live, i.e., the mouth. There are several different oral habitats where microorganisms can grow. Each habitat is populated by a characteristic community consisting of populations of various species, with each species filling a niche (a certain functional role) in the community.²,³ In order to remain in the mouth the microorganisms must adhere to the oral surfaces and resist being eliminated with the stream of saliva being swallowed, and grow under the different conditions prevailing at the various sites (Figures 1 and 2). The mucosal surfaces are characterized by a rapid cell turnover with continuous desquamation of the superficial epithelial cells and the microflora colonizing them. Only the papillary upper surface of the tongue has sufficient retention sites to harbor numerous microorganisms; generally, the numbers are smaller on the smooth oral mucosa of palate, gingiva, lips, cheeks, and floor of the mouth. The tonsils are usually not considered to be part of the mouth, but may act as reservoir for some dental plaque bacteria. The hard, nonshedding surfaces of teeth, fillings, artificial crowns, and dentures have a large potential for massive and long-lasting colonization (termed dental plaque), unless they are kept clean by oral hygiene. Special retentive areas, not exposed to mechanical friction during function, are occlusal fissures, approximal tooth surfaces, gingival pockets, and the fitting surface of artificial dentures⁴ (see later). Such sites can harbor extremely numerous and complex microbial communities, and are described below. Saliva flowing over the oral surfaces becomes contaminated with microorganisms from the various habitats, mainly from the large surface of the dorsum of the tongue.

FIGURE 1. Major oral habitats. Top: the papillary upper surface (dorsum) of the tongue. Middle: dental plaque on facial (f) and approximal (a) tooth surfaces. Dental plaque has been stained with disclosing solution. Below: lower molar, showing the pits and fissures (grooves) on the occlusal (chewing) surface.

FIGURE 2. Structure of the teeth and their supporting tissues (periodontium) illustrating the location of dental plaque. En: enamel, D: dentine, P: pulp, G: gingiva (gums), RC: root cementum, PF: periodontal fibers, B: bone, Ep: epithelium, CT: connective tissue, PP: periodontal pocket (in periodontal disease, plaque bacteria destroy the periodontal fibers and marginal bone, and cause downgrowth of the epithelium along the root so that a pocket is fonned).

III. THE NORMAL (RESIDENT) ORAL MICROFLORA OF MAN

A. DEFINITION

All the microorganisms which establish a more or less permanent residence at oral surfaces in man, in one or more of the oral habitats, are referred to as normal microflora (or normal microbiota) of the human mouth.⁵ Expressions such as resident, indigenous, autochthonous, or commensal microflora are used with a similar meaning. Probably “resident oral microflora” expresses the intended meaning most simply and without implying the possible useful or harmful effects which the microflora may have on the host. From an ecological point of view it is natural to include all microorganisms which have the mouth as their primary habitat in the resident oral flora, although they are not necessarily present in all mouths all the time. In fact, some resident oral microorganisms are dependent on special oral habitats, which are not always present, such as teeth or artificial hard surfaces (for Streptococcus mutans), and gingival crevices or pockets (for spirochaetes and some Gramnegative rods).⁶ Microorganisms qualify as members if they occupy a particular niche in the oral microflora and are frequently isolated fro...