The Phylogenetic Handbook
eBook - PDF

The Phylogenetic Handbook

A Practical Approach to Phylogenetic Analysis and Hypothesis Testing

  1. English
  2. PDF
  3. Available on iOS & Android
eBook - PDF

The Phylogenetic Handbook

A Practical Approach to Phylogenetic Analysis and Hypothesis Testing

About this book

The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP*, IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students.

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Yes, you can access The Phylogenetic Handbook by Philippe Lemey,Marco Salemi,Anne-Mieke Vandamme in PDF and/or ePUB format, as well as other popular books in Biological Sciences & Genetics & Genomics. We have over one million books available in our catalogue for you to explore.

Table of contents

  1. Cover
  2. Half-title
  3. Title
  4. Copyright
  5. Contents
  6. Contributors
  7. Foreword
  8. Preface
  9. Section I: Introduction
  10. Section II: Data preparation
  11. Section III: Phylogenetic inference
  12. Section IV: Testing models and trees
  13. Section V: Molecular adaptation
  14. Section VI: Recombination
  15. Section VII: Population genetics
  16. Section VIII: Additional topics
  17. Glossary
  18. References
  19. Index